Knowledge Management System of Northwest Institute of Plateau Biology, CAS
Genetic evidence for subspecies differentiation of the Himalayan marmot, Marmota himalayana, in the Qinghai-Tibet Plateau | |
Yan, Jingyan1,2,3; Chen, Hongjian4; Lin, Gonghua1,2; Li, Qian4; Chen, Jiarui1,2; Qin, Wen1,2; Su, Jianping1,2; Zhang, Tongzuo1,2 | |
2017-08-15 | |
发表期刊 | PLOS ONE |
ISSN | 1932-6203 |
卷号 | 12期号:8 |
文章类型 | Article |
摘要 | The primary host of plague in the Qinghai-Tibet Plateau (QTP), China, is Marmota himalayana, which plays an essential role in the maintenance, transmission, and prevalence of plague. To achieve a more clear insight into the differentiation of M. himalayana, complete cytochrome b (cyt b) gene and 11 microsatellite loci were analyzed for a total of 423 individuals from 43 localities in the northeast of the QTP. Phylogenetic analyses with maximum likelihood and Bayesian inference methods showed that all derived haplotypes diverged into two primary well-supported monophyletic lineages, I and II, which corresponded to the referential sequences of two recognized subspecies, M. h. himalayana and M. h. robusta, respectively. The divergence between the two lineages was estimated to be at about 1.03 million years ago, nearly synchronously with the divergence between M. baibacina and M. kastschenkoi and much earlier than that between M. vancouverensis and M. caligata. Genetic structure analyses based on the microsatellite dataset detected significant admixture between the two lineages in the mixed region, which verified the intraspecies level of the differentiation between the two lineages. Our results for the first time demonstrated the coexistence of M. h. himalayana and M. h. robusta, and also, determined the distribution range of the two subspecies in the northeast of QTP. We provided fundamental information for more effective plague control in the QTP. |
WOS标题词 | Science & Technology |
DOI | 10.1371/journal.pone.0183375 |
关键词[WOS] | BAYESIAN POSTERIOR PROBABILITIES ; POPULATION-STRUCTURE ; PHYLOGENETIC ANALYSIS ; RODENTIA ; SCIURIDAE ; PLAGUE ; EVOLUTIONARY ; SOFTWARE ; TREES ; INFERENCE |
收录类别 | SCI |
语种 | 英语 |
项目资助者 | Natural Science Foundation of China(31370405) ; Construction Funds for Qinghai Key Laboratories(2017-ZJ-Y23 ; 2017-ZJ-Y15) |
WOS研究方向 | Science & Technology - Other Topics |
WOS类目 | Multidisciplinary Sciences |
WOS记录号 | WOS:000407550500059 |
出版者 | PUBLIC LIBRARY SCIENCE |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | http://210.75.249.4/handle/363003/9793 |
专题 | 中国科学院西北高原生物研究所 |
通讯作者 | Su, Jianping; Zhang, Tongzuo |
作者单位 | 1.Chinese Acad Sci, Northwest Inst Plateau Biol, Key Lab Adaptat & Evolut Plateau Biota, Xining, Qinghai, Peoples R China 2.Qinghai Key Lab Anim Ecol Genom, Xining, Qinghai, Peoples R China 3.Univ Chinese Acad Sci, Beijing, Peoples R China 4.Qinghai Inst Endem Dis Prevent & Control, Xining, Qinghai, Peoples R China |
推荐引用方式 GB/T 7714 | Yan, Jingyan,Chen, Hongjian,Lin, Gonghua,et al. Genetic evidence for subspecies differentiation of the Himalayan marmot, Marmota himalayana, in the Qinghai-Tibet Plateau[J]. PLOS ONE,2017,12(8). |
APA | Yan, Jingyan.,Chen, Hongjian.,Lin, Gonghua.,Li, Qian.,Chen, Jiarui.,...&Zhang, Tongzuo.(2017).Genetic evidence for subspecies differentiation of the Himalayan marmot, Marmota himalayana, in the Qinghai-Tibet Plateau.PLOS ONE,12(8). |
MLA | Yan, Jingyan,et al."Genetic evidence for subspecies differentiation of the Himalayan marmot, Marmota himalayana, in the Qinghai-Tibet Plateau".PLOS ONE 12.8(2017). |
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