Genomic insights into zokors' phylogeny and speciation in China

NWIPB OpenIR

	Genomic insights into zokors' phylogeny and speciation in China
	Liu, X; Zhang, SZ; Cai, ZY; Kuang, ZR; Wan, N; Wang, YJ; Mao, LY; An, X; Li, F; Feng, T; Liang, XL; Qiao, ZL; Nevo, E; Li, KX
	2022
发表期刊	PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
卷号	119 期号:19
摘要	The phylogeny and speciation of subterranean zokors in China are unclear, as previous studies on morphology and limited molecular markers have generated conflicting results. This study unraveled the complex evolutionary history of eight zokor species in China based on de novo assembly at chromosome level and whole-genome sequencing of 23 populations. We found extensive phylogenetic discordances between nuclear and mitochondrial phylogenies, and different coalescent phylogenies, which could be explained by introgression and incomplete lineage sorting (ILS). The recent QinghaiTibet Plateau uplift (similar to 3.60 million y ago; Mya) drove Eospalax to speciate into clade A and clade B (similar to 3.22 Mya), and discordant phylogenies in this node were mainly attributed to introgression rather than ILS. Clade A rapidly diverged into three lineages due to geographical isolation and glaciation, while glaciation and C4 plant expansion contributed to the speciation of clade B. ILS contributed to the discordances of two rapidly radiated nodes rather than introgression. The effective population sizes (Ne's) of all the species of Eospalax were affected by three glaciations. Ancient polymorphisms and divergence hitchhiking contribute to genomic islands of all the species pairs. Positively selected genes putatively related to specific inhabitation adaptations were identified, such as heart development, neurogenesis, DNA repair, and immune response. Climate, geological tectonism, and C4 vegetation shaped the adaptation and speciation of zokors in China.
收录类别	SCIE
文献类型	期刊论文
条目标识符	http://210.75.249.4/handle/363003/61217
专题	中国科学院西北高原生物研究所
推荐引用方式 GB/T 7714	Liu, X,Zhang, SZ,Cai, ZY,et al. Genomic insights into zokors' phylogeny and speciation in China[J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,2022,119(19).
APA	Liu, X.,Zhang, SZ.,Cai, ZY.,Kuang, ZR.,Wan, N.,...&Li, KX.(2022).Genomic insights into zokors' phylogeny and speciation in China.PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,119(19).
MLA	Liu, X,et al."Genomic insights into zokors' phylogeny and speciation in China".PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 119.19(2022).