Knowledge Management System of Northwest Institute of Plateau Biology, CAS
Analysis of the maternal genome of Elymus nutans from the Qinghai-Tibet Plateau based on chloroplast genomes | |
Liu, Ruijuan; Xia, Mingze; Liu, Demei; Jiang, Liling; Shen, Jicheng; Chen, Wenjie | |
2021 | |
发表期刊 | GRASSLAND SCIENCE
![]() |
摘要 | Elymus nutans is an important forage and ecological restoration herbage in the Qinghai-Tibet Plateau, which is an allohexaploid species with the StStYYHH genomes. Previous studies suggested that Pseudoroegneria is the maternal genome donor to E. nutans, but exactly which Pseudoroegneria species is still unknown. Here, we report the complete chloroplast (cp) genome sequence of two E. nutans from the Qinghai-Tibet and five Pseudoroegneria species. The cp genomes of the seven samples ranged narrowly from 134,924 bp to 135,142 bp in size, comprising inverted repeats of 20,808-20,814 bp, single-copy regions of 80,536-80,754 bp (LSC) and 12,762-12,772 bp (SSC). It encoded 111 total genes, of which 78 protein-coding genes, 29 tRNA genes, and four rRNA genes. A comparative cp genome analysis and characteristic junctions of St-containing species revealed that the gene content and organization were conserved, but differences were still found in sequence variation and border regions. Further, the Bayesian inference (BI) phylogenetic tree using the whole chloroplast genome sequence demonstrated that P. cognata might be the most likely St genome donor of E. nutans in the Qinghai-Tibet Plateau, followed by P. strigosa. However, whether E. nutans has other maternal genomes still needs further research. |
关键词 | chloroplast genome Elymus nutans maternal genome Pseudoroegneria species |
文献类型 | 期刊论文 |
条目标识符 | http://210.75.249.4/handle/363003/60737 |
专题 | 中国科学院西北高原生物研究所 |
推荐引用方式 GB/T 7714 | Liu, Ruijuan,Xia, Mingze,Liu, Demei,et al. Analysis of the maternal genome of Elymus nutans from the Qinghai-Tibet Plateau based on chloroplast genomes[J]. GRASSLAND SCIENCE,2021. |
APA | Liu, Ruijuan,Xia, Mingze,Liu, Demei,Jiang, Liling,Shen, Jicheng,&Chen, Wenjie.(2021).Analysis of the maternal genome of Elymus nutans from the Qinghai-Tibet Plateau based on chloroplast genomes.GRASSLAND SCIENCE. |
MLA | Liu, Ruijuan,et al."Analysis of the maternal genome of Elymus nutans from the Qinghai-Tibet Plateau based on chloroplast genomes".GRASSLAND SCIENCE (2021). |
条目包含的文件 | 条目无相关文件。 |
除非特别说明,本系统中所有内容都受版权保护,并保留所有权利。
修改评论